rs254423132 SNP Detail

Summary

• ID
  rs254423132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85704015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAAA ACATACAAAA
  TACGCTGGAA GGGGGCCATG TAAACCTCGA GGTGGAAGGA CTGGGCGCAG GCGGGCGGGC
  CGGAGTCCAG TGTGTGAGCT GCGCCCCAGG CCTTTTGGCG GGTGCCCATC GCCTGCCCCC
  CTCACCCCAG TGGGGGGCAG GCGCCCAGCC TTCAAGGCTG GGGGTGTCCG TATGGGGCAA
  R
  GGAGGCTCTC AGAAGGCGTG TCCCTTGACC CCTAGCAGCA ACTGGCAGCC GTTGCTGACA
  TGGGTCATGA CCTTCTGCTT GAGCTGCGCC ACTTGCTCCC GTAGGAGACC GGCAGCACTC
  GACAGCCCCG CGTTCTCAGC CTTGAGTGTC TTCACCTTGT CCTCCAGGCG CGCGATGCGC
  TCCAGCTTCC GCTTCCGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375408852	MGP_WTSI_8_87501285	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254423132					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375408852	MGP_WTSI_8_87501285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85704015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	within coordinates
Junb	jun B proto-oncogene	within coordinates
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	within coordinates
Rr401033	regulatory region 401033	1272 bp upstream
Tssr78490	transcription start site region 78490	644 bp downstream
Tssr78491	transcription start site region 78491	629 bp downstream
Tssr78492	transcription start site region 78492	378 bp upstream
Tssr78493	transcription start site region 78493	470 bp upstream
Tssr78494	transcription start site region 78494	630 bp upstream
Tssr78495	transcription start site region 78495	781 bp upstream
Tssr78496	transcription start site region 78496	1197 bp upstream
Tssr78497	transcription start site region 78497	1227 bp upstream
Tssr78498	transcription start site region 78498	1586 bp upstream
Tssr82215	transcription start site region 82215	1049 bp upstream
Tssr82216	transcription start site region 82216	116 bp downstream
Tssr82217	transcription start site region 82217	488 bp downstream
Tssr82218	transcription start site region 82218	607 bp downstream
Tssr82219	transcription start site region 82219	624 bp downstream
Tssr82220	transcription start site region 82220	682 bp downstream
Tssr82221	transcription start site region 82221	715 bp downstream
Tssr82222	transcription start site region 82222	736 bp downstream
Tssr82223	transcription start site region 82223	1065 bp downstream
Tssr82224	transcription start site region 82224	1138 bp downstream
Tssr82225	transcription start site region 82225	1323 bp downstream