rs254427838 SNP Detail

Summary

• ID
  rs254427838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105435940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGTTGA AGAGGATTAT
  GACTATGTCC CCTATGGGTA TTTGAAGAGT TGACATAAGT GACAATATTT TTCTGGCCTA
  TGACCTGTGG CTGTGGGCCC AGCCCATGCA CACTGAGTTC ATTGTGCCTT TGAGTTCTCT
  CTCCCCACCC CCTCCACGTG GGACCTAGGC TTGCAGTGAC CTCTCTCTGT CCCCTGACCA
  R
  GACTCTGATC TAAGCATCCT GGACAGAAAC TTGCAGGCTC TGGTACCAGG ATGCACTTAG
  AATACTAGTT TGGGTGACAC ACTGCCACCT CAGGCTTCCT CCTCTCCCCT CTGCTTCTCT
  TTACTTCTGC TCCCTCCGTT TCTTTGTCTG TGTCTCTGTG TCTCTGTCAC ACACCCATCA
  ATACGTTCTG ACACATGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370577	CHEV_7_112935247	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254427838					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105435940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	91 bp proximal
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	1084 bp downstream
Rr652815	regulatory region 652815	within coordinates
Rr652816	regulatory region 652816	911 bp proximal
Tssr74105	transcription start site region 74105	750 bp downstream
Tssr74106	transcription start site region 74106	773 bp downstream
Tssr74107	transcription start site region 74107	811 bp downstream
Tssr74108	transcription start site region 74108	834 bp downstream