rs254443118 SNP Detail

Summary

• ID
  rs254443118
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74700041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTATAGC ATTACTCAAT
  TGTTTTCCTC TATATCCTGT ATACTGAAGT TAGAGTCAAT GCTTGATTAG ATTCAGCTTT
  TAAATTGTTA AAATTTAACA TTTTGTAAAA TAAGCCATAC TTTATAAATA TTGCTGTGTA
  ATCCAAATCT CATCAGGAGA CAAACTAGAT AATTGCCCTA GATTTCCTGA TCTAAAATTG
  W
  TAAGTAACCC TTTCATAGTT CAACATCTGT CAATGACTGT TGCTTAAGTA TTTTGCTACT
  AAGTTCAAAT TGTTTTCACC AGGCTAGTTT TTCTCTGCAT AGCCCTAGCT GATCTGAACT
  CACTCTGCAG ACCAGGCTGT CCTCATACTC AGAGATCCAC CTGCCTCAGC CTACCGAATG
  GTGGGGTTAA AGAAGTGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350128218	MGP_WTSI_1_74707456	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254443118					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350128218	MGP_WTSI_1_74707456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74700041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	557 bp proximal
Gm70804	predicted gene, 70804	within coordinates
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	57 bp proximal
Rr413231	regulatory region 413231	513 bp proximal
Rr413232	regulatory region 413232	874 bp proximal
Rr413233	regulatory region 413233	916 bp proximal
Tssr7442	transcription start site region 7442	668 bp upstream
Tssr7443	transcription start site region 7443	751 bp upstream
Tssr7444	transcription start site region 7444	816 bp upstream
Tssr7445	transcription start site region 7445	832 bp upstream
Tssr7446	transcription start site region 7446	912 bp upstream
Tssr7447	transcription start site region 7447	1214 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	763 bp upstream