rs254444721 SNP Detail

Summary

• ID
  rs254444721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCGAGAGTC GTATCTATTG TTTCTTAAAT
  TGTCATCAGG GTGGTTTTTT TTCTTCCTGC TTCTTCAAGT GAAGGTACCG CTACAAAAGG
  AAACTCCAGC CCCTCCTGTT CTCCAACGGC CTGTGATTAC TACaaaaaga aaaaaaaaaa
  R
  gcaaaaaaaa aaaaaaaagc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa ggaaaaaaaa
  aGCACCCAAA CTCAAAACCA ACCAACCAAA CAACCCCCAA CAGCCAGGCA TATATCTCTG
  TTTTTTCTTA ATTTTGGTCT TTTCGTTGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323654519	CHEV_11_44431295	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254444721					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	490 bp distal
Cpgi2763	CpG island 2763	352 bp proximal
Cpgi2764	CpG island 2764	1979 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1688 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	777 bp upstream
Rr369170	regulatory region 369170	480 bp downstream
Rr445653	regulatory region 445653	466 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	491 bp downstream
Tssr101030	transcription start site region 101030	457 bp downstream
Tssr101031	transcription start site region 101031	432 bp downstream
Tssr101032	transcription start site region 101032	396 bp downstream
Tssr101033	transcription start site region 101033	280 bp downstream
Tssr101034	transcription start site region 101034	250 bp downstream
Tssr101035	transcription start site region 101035	235 bp downstream
Tssr101036	transcription start site region 101036	163 bp downstream
Tssr101037	transcription start site region 101037	133 bp downstream
Tssr101038	transcription start site region 101038	90 bp downstream
Tssr101039	transcription start site region 101039	74 bp upstream
Tssr101040	transcription start site region 101040	135 bp upstream
Tssr101041	transcription start site region 101041	331 bp upstream
Tssr101042	transcription start site region 101042	392 bp upstream
Tssr101043	transcription start site region 101043	415 bp upstream
Tssr101044	transcription start site region 101044	785 bp upstream
Tssr107570	transcription start site region 107570	272 bp downstream