rs254449980 SNP Detail

Summary

• ID
  rs254449980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91051953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGCTTC CTCGGGCACT
  CCAGACTCCA GCCACACTTC AGCCTAGCGC CATGGCCCCT CCCACCTGCC GGCTCCTCAG
  TGCTGCACTG GTCCTGCTGC TGCTGCTGGC CACCAACCAC CAGGCTACAG GTGGGATTCG
  GATTCGAGGC TGATGTTTCT GGGGAAGCCT CAGGTGGGCG CAGCCATCCC CAGCCCTTCT
  R
  ACCCAGTGTC TTCTCCTACA GGGGCTGTTG TGGCCAGTGA ACTGCGCTGT CAATGCCTGA
  AGACCCTGCC AAGGGTTGAC TTCAAGAACA TCCAGAGCTT GAGTGTGACG CCCCCAGGAC
  CCCACTGCGC CCAGACAGAA GTCATGTGAG TGTCTCCCTG GATAGCCTCT GCCATGGCCA
  GAGTTGCCCA GACCCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847489	MGP_WTSI_5_91333120	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254449980					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847489	MGP_WTSI_5_91333120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91051953 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	890 bp upstream
Rr614420	regulatory region 614420	901 bp distal
Rr614421	regulatory region 614421	1032 bp distal
Rr614422	regulatory region 614422	211 bp distal
Tssr47224	transcription start site region 47224	385 bp downstream
Tssr47225	transcription start site region 47225	283 bp downstream
Tssr47226	transcription start site region 47226	214 bp downstream
Tssr47227	transcription start site region 47227	20 bp downstream
Tssr47228	transcription start site region 47228	18 bp upstream
Tssr47229	transcription start site region 47229	45 bp upstream
Tssr47230	transcription start site region 47230	70 bp upstream
Tssr47231	transcription start site region 47231	90 bp upstream
Tssr47232	transcription start site region 47232	255 bp upstream
Tssr47233	transcription start site region 47233	272 bp upstream
Tssr47234	transcription start site region 47234	344 bp upstream
Tssr47235	transcription start site region 47235	1094 bp upstream
Tssr47236	transcription start site region 47236	1114 bp upstream
Tssr47237	transcription start site region 47237	1163 bp upstream
Tssr47238	transcription start site region 47238	1169 bp upstream
Tssr47239	transcription start site region 47239	1229 bp upstream
Tssr47240	transcription start site region 47240	1241 bp upstream
Tssr47241	transcription start site region 47241	1256 bp upstream
Tssr47242	transcription start site region 47242	1293 bp upstream
Tssr47243	transcription start site region 47243	1316 bp upstream
Tssr47244	transcription start site region 47244	1350 bp upstream
Tssr47245	transcription start site region 47245	1370 bp upstream
Tssr47246	transcription start site region 47246	1421 bp upstream
Tssr47247	transcription start site region 47247	1465 bp upstream
Tssr47248	transcription start site region 47248	1528 bp upstream
Tssr47249	transcription start site region 47249	1598 bp upstream
Tssr47250	transcription start site region 47250	1736 bp upstream
Tssr47251	transcription start site region 47251	1800 bp upstream
Tssr47252	transcription start site region 47252	1852 bp upstream
Tssr51810	transcription start site region 51810	951 bp upstream
Tssr51811	transcription start site region 51811	897 bp upstream
Tssr51812	transcription start site region 51812	107 bp downstream
Tssr51813	transcription start site region 51813	139 bp downstream
Tssr51814	transcription start site region 51814	1113 bp downstream
Tssr51815	transcription start site region 51815	1147 bp downstream
Tssr51816	transcription start site region 51816	1181 bp downstream