rs254450988 SNP Detail

Summary

• ID
  rs254450988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127485198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGGGAC ATAATGTCAG
  CTGGTCCCTG GGGGCACAGC AAGCACATGA TGTCAGCTGG TCCCTGGAGG CACAGTGGGC
  ACGTGATATC AGATGGTCCC TGGCTCCTCC AGTAAGCAGC ACCAACCCTA GACCTTCCGA
  GGCAGAACTC TGATCTGATG TCATTTCATC ACATCCGCAG GGTCTATAGA AGTCAGGCAG
  Y
  ACTGCTCTAG AGCCCCAGTC ACTGCTCATT TTTTTATGAA TGGATTGAAA GGAGACTGAA
  AGACTTGACT GTCATTTGCC TAGCAAGTGC ATAACTTTTG AAACTTAAGT TTTTAAAGGT
  ATGTTTCCCT TTTACTTCAC TTATCTTGCC ATGACCTCAG CAACAGTTCT CAGCCGTTGG
  GCATCCTCCT CGTCCATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359644664	MGP_WTSI_3_127394467	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254450988					SNP	T	T	T	T	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359644664	MGP_WTSI_3_127394467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127485198 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	386 bp downstream
Tssr35587	transcription start site region 35587	766 bp upstream
Tssr35588	transcription start site region 35588	245 bp upstream
Tssr35589	transcription start site region 35589	997 bp downstream