rs254454369 SNP Detail

Summary

• ID
  rs254454369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25113484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTTCCT TTCTCACAAC
  GTCCAACACC GAGTCAACCA GCTCTGCACC TTCTGTGTAG TGCCCCTTGG CCCAGTTGTT
  CCCAGCCCCA CTCTGACCTG TAAGAGAAAA CAGTAGGTCA CACTAAGTAT GTGCCCAAGG
  GGCCAAATGA CATGAGGTGA CACTGAATAA AGTGTACAGA CCCAAAACAA TCTGCCATGT
  W
  AAAAAAAAGG GGAGAGGGGG TGCTGTGCAT AATGGCACAA GCTTTTAATC CCAGCACTTG
  GTAGGCAGGT AGTTCTGAGT TTAAGGTCAG CCTGGTCTAC AGTTAAAGAG GCCAGGCAGG
  GATACATAGA TTGGGGATGG GGGGTGGGGG AGACCAGACG GAGATGTACA GAACACACTA
  GAGCTAAGAC AGTAAATACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405056	MGP_WTSI_2_25078992	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254454369					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405056	MGP_WTSI_2_25078992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25113484 () rs orientation: forward

Symbol	Name	Function Class
Cimip2a	ciliary microtubule inner protein 2A	1192 bp downstream
Cpgi11300	CpG island 11300	296 bp proximal
Gm75683	predicted gene, 75683	1595 bp downstream
Gm75691	predicted gene, 75691	1520 bp upstream
Rr553016	regulatory region 553016	1220 bp proximal
Rr553017	regulatory region 553017	1531 bp proximal
Rr553018	regulatory region 553018	1563 bp proximal
Tssr16666	transcription start site region 16666	1571 bp upstream
Tssr16667	transcription start site region 16667	1891 bp upstream
Tssr16668	transcription start site region 16668	1944 bp upstream
Tssr22949	transcription start site region 22949	758 bp downstream
Tssr22950	transcription start site region 22950	1181 bp downstream
Tubb4b	tubulin, beta 4B class IVB	within coordinates