rs254460142 SNP Detail

Summary

• ID
  rs254460142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAGGCG GCTCCCCCAG
  GTACAGCCAA TGTGGGGGGC GCCTTTGCAG TAGGGCAGGG AAAGGTGGTC AGGGCTCCCC
  AGGCCAGGCT CAATGGAAAC TTTTTTTTAG TTTCCCAGGT ACTGAAAGTC TGGACCCAAA
  ACACTTGAAA GTGACTTTGA AAGGGGAGGA GTAAAGACTC CCCTCCCCCG CCTACAGCTT
  M
  CTAGTAGCAA ACAAGATCAC TCTTAATGCT TTGAGTTCAG CTTGGCTTCA GACTCACTAG
  GTAGTCAAGG TTGTGCTTGA ATTCCCGATT CTCCTTTCTC CACGTCCCAT GTGGTGGCTT
  AAAAGCGTTT CCCACCATGG CACCTCTAAA CTAGTGTTAA AGTGAGCAGA GATATTATAA
  GTAAGTAGAA GGGGGGAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505619	MGP_WTSI_2_29746703	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254460142					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505619	MGP_WTSI_2_29746703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	251 bp distal
Gm75149	predicted gene, 75149	369 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	1307 bp downstream
Rr554173	regulatory region 554173	633 bp distal
Rr554174	regulatory region 554174	within coordinates
Rr554175	regulatory region 554175	473 bp distal
Tssr452	transcription start site region 452	1467 bp downstream
Tssr453	transcription start site region 453	1190 bp downstream
Tssr454	transcription start site region 454	1167 bp downstream
Tssr455	transcription start site region 455	1138 bp downstream
Tssr456	transcription start site region 456	1069 bp downstream
Tssr17034	transcription start site region 17034	1977 bp downstream
Tssr17035	transcription start site region 17035	1940 bp downstream
Tssr17036	transcription start site region 17036	1430 bp downstream
Tssr17037	transcription start site region 17037	1347 bp downstream
Tssr17038	transcription start site region 17038	1102 bp downstream
Tssr17039	transcription start site region 17039	1076 bp downstream
Tssr17040	transcription start site region 17040	672 bp downstream
Tssr17041	transcription start site region 17041	652 bp downstream
Tssr17042	transcription start site region 17042	638 bp downstream
Tssr17043	transcription start site region 17043	627 bp downstream
Tssr17044	transcription start site region 17044	473 bp downstream
Tssr17045	transcription start site region 17045	315 bp downstream
Tssr17046	transcription start site region 17046	802 bp upstream
Tssr17047	transcription start site region 17047	1871 bp upstream
Tssr23341	transcription start site region 23341	813 bp upstream