rs254466826 SNP Detail

Summary

• ID
  rs254466826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAGGAA ATACAGCCAG
  TCCACAGCCT TTTCAGACTG CAGCTGACCG GAAGAAAGCC TTTGGTTCAT TCATTCGGAT
  AGCCTCGGTA GTACAGCCCT GAAATAGAAG TTGGGCTTTT AAAGAGAAAG GAAAAAAAGT
  CTCTACACTC GCTGAGAAGA GATAAATCGA TACACAGGAG GGAATAGAGA ATCGGATTCA
  R
  CGTCTCTAAT GCAGGCAGGC AAAAGGTAAG CCTCTCTCGT GTGGCAGTTT AAGAGAAAAG
  TGGTGGTTGT TTGTGGCTTT CTGGGGTACA GCAACCTTGA TTGATCCATA TTGTTTCTCA
  GCGGAGAAGG GGGGCAGCCT TTGTGAATAT TCCTGGAGTA GCAGATCCCC AATGTTCCTC
  CGTCTTTTAA GTAGTGCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530167	MGP_WTSI_5_123440075	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254466826					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530167	MGP_WTSI_5_123440075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128129 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1337 bp distal
Cpgi16566	CpG island 16566	533 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	740 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	796 bp upstream
Rr620030	regulatory region 620030	1544 bp distal
Rr620031	regulatory region 620031	1043 bp distal
Rr620032	regulatory region 620032	918 bp distal
Rr620033	regulatory region 620033	771 bp distal
Rr620034	regulatory region 620034	270 bp distal
Rr620035	regulatory region 620035	125 bp distal
Rr620036	regulatory region 620036	250 bp proximal
Rr620037	regulatory region 620037	751 bp proximal
Tssr48730	transcription start site region 48730	814 bp downstream
Tssr48731	transcription start site region 48731	785 bp downstream
Tssr48732	transcription start site region 48732	751 bp downstream
Tssr48733	transcription start site region 48733	700 bp downstream
Tssr48734	transcription start site region 48734	454 bp downstream
Tssr48735	transcription start site region 48735	327 bp downstream
Tssr48736	transcription start site region 48736	304 bp downstream
Tssr48737	transcription start site region 48737	123 bp downstream
Tssr48738	transcription start site region 48738	692 bp upstream
Tssr48739	transcription start site region 48739	709 bp upstream
Tssr48740	transcription start site region 48740	724 bp upstream
Tssr48741	transcription start site region 48741	789 bp upstream
Tssr53169	transcription start site region 53169	1540 bp upstream
Tssr53170	transcription start site region 53170	1361 bp upstream
Tssr53171	transcription start site region 53171	986 bp upstream
Tssr53172	transcription start site region 53172	955 bp upstream
Tssr53173	transcription start site region 53173	786 bp upstream
Tssr53174	transcription start site region 53174	728 bp upstream
Tssr53175	transcription start site region 53175	219 bp downstream
Tssr53176	transcription start site region 53176	338 bp downstream
Tssr53177	transcription start site region 53177	394 bp downstream
Tssr53178	transcription start site region 53178	411 bp downstream
Tssr53179	transcription start site region 53179	452 bp downstream
Tssr53180	transcription start site region 53180	467 bp downstream