rs254472222 SNP Detail

Summary

• ID
  rs254472222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151246992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatctgatg ccctcttcag gtgtgtctga
  agacagctac agtgtactca tatatatata taaaataaaa aattttttaa agaGGTTTGA
  TTTAGGAAAA GGTTTGAATT AACGGTATTT CTGTCCCTTC CTCTTCCCTt cactcactca
  Y
  tcactcactc attcattcat tcattcCTTT TCTTCCTCCC TCCCCACCTC CTTAGGTTCC
  AGGAATTCCA CTCAGAGCGT CATGCATGTT AAACAAATGC TCTTCCTTAG ACGTATTCCC
  TAGTCCATGG ACATTTTCTG AAAAATCTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320055958	CHEV_1_153218371	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254472222					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151246992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			329 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant