rs254474500 SNP Detail

Summary

• ID
  rs254474500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79888827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCCTGG TGTCATTGAC
  CTATCTATCA CCCTAGTACC TAGGAGTCTA AGGCAGGATT GCTGAGTTCT AAGACCGGCT
  GAACTGTAAA ATTGGGGGTC GAGGGGGGGG GGAGAAGCTA CATCTGGGGT TCGGGACTCA
  ATGGGTTGAG AGCCCTCACT TGCATGCTGC AGGTTCTGGG TTCCATCCCT ACACCTCATG
  K
  CAGCACACTT TTGCCATTCC ATAGTTTAGG TTAGCCTGAG CTACAGGAGG CAACCTCTGA
  TAAAGAAAAT AGAAATGGAA GGGATGTGGG GATTGGCCGA CACCGAGATC CCAGCACTCA
  GTAGGCTGAG GCTGGCGGTC CAGGGGTTCA AGGTCATCCT CTGCTATATA AACAGTCCAA
  GGCTAGCCTG GGTTACATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381013923	MGP_WTSI_10_79515738	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254474500					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381013923	MGP_WTSI_10_79515738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79888827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	257 bp proximal
Gm65896	predicted gene, 65896	189 bp downstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	7 bp downstream
Rr402035	regulatory region 402035	310 bp upstream
Rr435055	regulatory region 435055	996 bp distal
Rr435056	regulatory region 435056	556 bp distal
Rr435057	regulatory region 435057	5 bp proximal
Rr435058	regulatory region 435058	977 bp proximal
Rr435059	regulatory region 435059	1192 bp proximal
Rr435060	regulatory region 435060	1423 bp proximal
Tssr94472	transcription start site region 94472	194 bp upstream
Tssr94473	transcription start site region 94473	566 bp upstream
Tssr94474	transcription start site region 94474	630 bp upstream
Tssr94475	transcription start site region 94475	973 bp upstream
Tssr94476	transcription start site region 94476	1004 bp upstream
Tssr94477	transcription start site region 94477	1036 bp upstream
Tssr94478	transcription start site region 94478	1053 bp upstream
Tssr98381	transcription start site region 98381	366 bp downstream