rs254477740 SNP Detail

Summary

• ID
  rs254477740
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4338317 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCTAACCCGG AGCAGTCCAA
  GGACAAAGGC AGAGAGAGCC AAGAGATGTC AAGCATCTCT TGACAGGAGA ACGGGCATGC
  GTCTCCCTCT GCACCCCTGA AAAGACCGTC TGCAGCGGCA GGACTGGTCC TACCTAAACA
  CTCTGTAAAC AAGGGGGCCG GGCCGCCAGC CTCCGGGCCC GGCCGCTGAG AAGTTTCCTC
  S
  CCTCAGCTGC ACATGGCTTG CAGAACTTTG GCTGGGGCCG CGAGCCCAGG CTGGGTGGAA
  GCCGCAGCGC CGAGCTGCAG GCGGCGGCAG CAGCGGCGGC GGCGGCGGCG ACGGCGGCAG
  AGCAGCAGGA GGCGGAGGCG GGCGGGCAGG GGGGAGGGGA GCGGCTGGGG GGGCGGAGGG
  GCTCTTGCCG CCACTGCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379314769	MGP_WTSI_10_5958224	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254477740					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379314769	MGP_WTSI_10_5958224	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4338317 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1265	CpG island 1265	within coordinates
Rr224739	regulatory region 224739	within coordinates
Rr368917	regulatory region 368917	within coordinates
Tssr92255	transcription start site region 92255	1142 bp downstream
Tssr92256	transcription start site region 92256	1112 bp downstream
Tssr92257	transcription start site region 92257	766 bp downstream
Tssr96505	transcription start site region 96505	1322 bp upstream
Tssr96506	transcription start site region 96506	838 bp upstream
Tssr96507	transcription start site region 96507	315 bp upstream
Tssr96508	transcription start site region 96508	254 bp upstream
Zbtb2	zinc finger and BTB domain containing 2	209 bp upstream