rs254488534 SNP Detail

Summary

• ID
  rs254488534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106015363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATACTA TAATCATTCC
  TTTCGCAAAC TTAGATACCC TGTTTAGACT CCCCCCACCC CCACCCCGGC ATCCTCCTCC
  TTCTCGGAGT CTTCCTCCAC CTTACCTAGT GATCGGCTGC TTAAAAAATG ACTTCTAGTC
  TCAGATCTCA TTCACCCTCA AACTGTATAC TTTTCTGGAT GTCTACTGAC CACTATATGG
  R
  CCAGTTCTTC CATTTTCCCT TCGTTCATTC CACCTACCTC CACGTAATTA CCAGAATTCA
  CCTGTTTCTT TCACGTCTCA GGTTCTTCTG CCAAGAATTC TTTTGCCAAT GTGTCCCTGG
  AGCAACCTCT TAACCATTTT TTTCAGGGCC CGGTTTAGGC CTCACTTTCT CTGGGAAGCC
  TTCCCGATGT GTAAAGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375909999	MGP_WTSI_8_107812631	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254488534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375909999	MGP_WTSI_8_107812631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106015363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	159 bp proximal
Exoc3l	exocyst complex component 3-like	1193 bp downstream
Gm20163	predicted gene, 20163	452 bp upstream
Matcap1	microtubule associated tyrosine carboxypeptidase 1	within coordinates
Rr401088	regulatory region 401088	301 bp upstream
Rr401089	regulatory region 401089	727 bp upstream
Rr668838	regulatory region 668838	1605 bp distal
Rr668839	regulatory region 668839	within coordinates
Rr668840	regulatory region 668840	309 bp proximal
Rr668841	regulatory region 668841	463 bp proximal
Rr668842	regulatory region 668842	534 bp proximal
Rr668843	regulatory region 668843	660 bp proximal
Rr668844	regulatory region 668844	787 bp proximal
Rr668845	regulatory region 668845	867 bp proximal
Rr668846	regulatory region 668846	1123 bp proximal
Rr668847	regulatory region 668847	1526 bp proximal
Tssr79123	transcription start site region 79123	1252 bp upstream
Tssr82634	transcription start site region 82634	337 bp downstream
Tssr82635	transcription start site region 82635	353 bp downstream
Tssr82636	transcription start site region 82636	389 bp downstream
Tssr82637	transcription start site region 82637	734 bp downstream
Tssr82638	transcription start site region 82638	1144 bp downstream