CGAGAGAGAA GGTAGAGGAG CTGGTGGTGA TGGTGATACT GGAGAAGGAG GGGGGCAGTG ATGCAGCAGA GGGGAGTTCC CTCCCTCCCT TCCGCAGTCA CGACTCATGG ATTTGTCTAC AACTATGCCC TTCAAAATGA CCTTAAAAAA AAAAACCTAG TACCTTTCCA GTGTAAGGAG GTAAAAAACA AACACGGTAT S TAATTTTCAA TGGGGTATGA GGGGGAGTCC AGCCAAGGAA GCAACAGGCT GCATGAAATG CTCTAATATA ACCTGTTTCT TCGTTTGTAT CATGAAGAGC TTAAAAACAC CATGTCTAGC CAAGGCTTAA AAAACGAGCC ATGAATGGAG CTCACTGGGC CATTTCTGGG CTGTGATGAC TGCAATGTGT GAGGACTGCA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss352216944 | MGP_WTSI_1_166387218 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs254493472 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss352216944 | MGP_WTSI_1_166387218 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/G |
Location: Chr1:164284656 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atp1b1 | ATPase, Na+/K+ transporting, beta 1 polypeptide | within coordinates | ||||||
Cpgi945 | CpG island 945 | 391 bp proximal | ||||||
Gm32391 | predicted gene, 32391 | 1436 bp upstream | ||||||
Gm70492 | predicted gene, 70492 | 1386 bp downstream | ||||||
Rr422209 | regulatory region 422209 | 1629 bp distal | ||||||
Rr422210 | regulatory region 422210 | 478 bp distal | ||||||
Rr422211 | regulatory region 422211 | 857 bp distal | ||||||
Rr422212 | regulatory region 422212 | 523 bp proximal | ||||||
Rr422213 | regulatory region 422213 | 1024 bp proximal | ||||||
Rr422214 | regulatory region 422214 | 1152 bp proximal | ||||||
Rr422215 | regulatory region 422215 | 1258 bp proximal | ||||||
Rr422216 | regulatory region 422216 | 1316 bp proximal | ||||||
Rr422217 | regulatory region 422217 | 1429 bp proximal | ||||||
Rr422218 | regulatory region 422218 | 1649 bp proximal | ||||||
Tssr9788 | transcription start site region 9788 | 1430 bp upstream | ||||||
Tssr9789 | transcription start site region 9789 | 1449 bp upstream | ||||||
Tssr14746 | transcription start site region 14746 | 907 bp downstream | ||||||
Tssr14747 | transcription start site region 14747 | 1258 bp downstream | ||||||
Tssr14748 | transcription start site region 14748 | 1638 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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