rs254493472 SNP Detail

Summary

• ID
  rs254493472
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164284656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAGAGAA GGTAGAGGAG
  CTGGTGGTGA TGGTGATACT GGAGAAGGAG GGGGGCAGTG ATGCAGCAGA GGGGAGTTCC
  CTCCCTCCCT TCCGCAGTCA CGACTCATGG ATTTGTCTAC AACTATGCCC TTCAAAATGA
  CCTTAAAAAA AAAAACCTAG TACCTTTCCA GTGTAAGGAG GTAAAAAACA AACACGGTAT
  S
  TAATTTTCAA TGGGGTATGA GGGGGAGTCC AGCCAAGGAA GCAACAGGCT GCATGAAATG
  CTCTAATATA ACCTGTTTCT TCGTTTGTAT CATGAAGAGC TTAAAAACAC CATGTCTAGC
  CAAGGCTTAA AAAACGAGCC ATGAATGGAG CTCACTGGGC CATTTCTGGG CTGTGATGAC
  TGCAATGTGT GAGGACTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352216944	MGP_WTSI_1_166387218	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254493472					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352216944	MGP_WTSI_1_166387218	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164284656 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	Intron
Cpgi945	CpG island 945	391 bp proximal
Gm32391	predicted gene, 32391	1436 bp upstream
Gm70492	predicted gene, 70492	1386 bp downstream
Rr422209	regulatory region 422209	1629 bp distal
Rr422210	regulatory region 422210	478 bp distal
Rr422211	regulatory region 422211	857 bp distal
Rr422212	regulatory region 422212	523 bp proximal
Rr422213	regulatory region 422213	1024 bp proximal
Rr422214	regulatory region 422214	1152 bp proximal
Rr422215	regulatory region 422215	1258 bp proximal
Rr422216	regulatory region 422216	1316 bp proximal
Rr422217	regulatory region 422217	1429 bp proximal
Rr422218	regulatory region 422218	1649 bp proximal
Tssr9788	transcription start site region 9788	1430 bp upstream
Tssr9789	transcription start site region 9789	1449 bp upstream
Tssr14746	transcription start site region 14746	907 bp downstream
Tssr14747	transcription start site region 14747	1258 bp downstream
Tssr14748	transcription start site region 14748	1638 bp downstream