rs254493524 SNP Detail

Summary

• ID
  rs254493524
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105430826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACGCCG GCCGCGCGGC
  CGCCCAGGCC CCCCGCATCA GGTGCGGAAA GTTGAGCCTC CGAGCGTCAC CTGGGGCCGG
  CGGGAGGCGA CGGGTGCGTC CAGCCCCGGC CCCCGGAGCC GCGCCAGGCC CAGACCGGCC
  CTTACCTGCG TCCGCGCCCC GCCCGGCTCC CAGCACTCAC GGCGAGGCCG GCTCCAGAGA
  M
  GGGAAGCGGC AGGAGACAAA CCCCGCGGAA AGCGCTGGAG ATGCTCCCGC AGCCCGACCC
  CTTGGCCTGG GATTCGGCGC CCAACATCCG CCTGCGCTCC CGCTCCGCGT CTCCCACGAG
  CCGCGCGTGG GCGGCGCCGA GCCTGACCCC GCGTAGACCC GCCGGCCGCG CAGGCCCCGC
  TCGTTCGGCC CCGCGGGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389811519	MGP_WTSI_13_106084398	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254493524					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389811519	MGP_WTSI_13_106084398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105430826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	within coordinates
Rnf180	ring finger protein 180	within coordinates
Rr485529	regulatory region 485529	1638 bp distal
Rr485530	regulatory region 485530	within coordinates
Rr485531	regulatory region 485531	74 bp proximal
Tssr123954	transcription start site region 123954	1303 bp upstream
Tssr123955	transcription start site region 123955	16 bp upstream
Tssr123956	transcription start site region 123956	within coordinates
Tssr123957	transcription start site region 123957	31 bp downstream
Tssr123958	transcription start site region 123958	63 bp downstream
Tssr123959	transcription start site region 123959	108 bp downstream
Tssr123960	transcription start site region 123960	339 bp downstream
Tssr123961	transcription start site region 123961	501 bp downstream