rs254496600 SNP Detail

Summary

• ID
  rs254496600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92492854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGTTT CCCATTACTT
  GTGATTGTAA GGACATTCGC TGTAATTCTT CCTAACAGAC ATGTTTGCTT ATTGCTTATC
  ATTGTAGGAG AGGAGGGCAG AGCTGATGGG AAAAAGAAGT CAGCAGTGTA GATGTTGAAC
  ATTAGTAGAG AACATAGTAG GTCACTGTGT AGACAGGTTG ACAAATGCCA TCTTGGGGGC
  R
  TGGCACAAAA CATGCACACA AGCCACCTAT TCATGTTCTC TACTGAGTAG CCTGGCGTTG
  GGATTAATGA GTCTGATGGC CAGCTGTGCT GCTCTTTCTA CGATGACTCC TCAGTTCTTA
  GAGGGCACAC TGTGAGCAAT CTCAGCACAG CAAGATTTGT TACACATCAG CTGCACCTCC
  AGCTCCTTGC CATTGTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389492736	MGP_WTSI_13_93126301	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254496600					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389492736	MGP_WTSI_13_93126301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92492854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	679 bp distal
Dhfr	dihydrofolate reductase	within coordinates
Gm19308	predicted gene, 19308	4 bp downstream
Msh3	mutS homolog 3	1339 bp upstream
Rr403896	regulatory region 403896	1545 bp downstream
Rr483661	regulatory region 483661	1610 bp distal
Rr483662	regulatory region 483662	1808 bp distal
Rr483663	regulatory region 483663	1658 bp distal
Rr483664	regulatory region 483664	853 bp distal
Rr483665	regulatory region 483665	1484 bp proximal
Tssr120622	transcription start site region 120622	1580 bp downstream
Tssr120623	transcription start site region 120623	1170 bp downstream
Tssr120624	transcription start site region 120624	1136 bp downstream
Tssr120625	transcription start site region 120625	1129 bp downstream
Tssr120626	transcription start site region 120626	1098 bp downstream
Tssr123429	transcription start site region 123429	1826 bp upstream
Tssr123430	transcription start site region 123430	1321 bp upstream