rs254497022 SNP Detail

Summary

• ID
  rs254497022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110445153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAACAA CTGTTTGTTA
  ATATTATATA AGGGGAAGAT AAACTTACTA GCAGATTCTC TGTTTGGCTG AGAACATCTC
  ATGAATTCAG TTTTAACAAT ATGTTTCACA AAGTAAAAGG AGCATGAAGA CATATCAGAA
  TACATACAAG ATTATATATT CCAAGATATA TATGTACCAC ATTCTCTTTA TCCATTCATC
  Y
  GTTCATGAAC ATCTAGACTG TTTCCAATTC CTGGCTTTTA TGAACAGGAC AACTATGAAT
  ACAGATAAGC AAGTGTCTTT GTAGTAATAT GTAAAGCTCA TGATATATGC TTAAGAGTGC
  TATAGCTGCA TCTTGTGGTA TATGAGGAAC CACCACATTG ATTTCCATAG TGGCTGTTCA
  AATTTGCATA CATACCAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321257616	CHEV_4_110260561	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254497022					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110445153 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	within coordinates
Rr377006	regulatory region 377006	within coordinates
Tssr38375	transcription start site region 38375	1458 bp upstream