rs254499938 SNP Detail

Summary

• ID
  rs254499938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156768095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGCACCA TTTGATGCAG
  TGTGACTTAG TGGAAGGTTT TCAGTGAGCC ACCTTGGTGT AATCATTAGG TCATTCGGGA
  ATAGATGCGA TCCTTTTCTA GGCAATGTGC AGTGGAGGGT GGAGGGACAG TTCTATAGCA
  GCACTGAGTG TAGATTGTGA AGGGACCAAA TTCGTTTTGA TTTCCTTTTT CCCTATAATA
  R
  CTAATCAAAA CAGTGGATTC TTTTATGCAG AAGAAAGTTA AACACTGTCC CTTTTGACCA
  CTGTTCCCTT CTGTGGAGAA GGTAGAAGAA CGCTCCTTCA TCCCCTTGGT TAAAACATGC
  CCATGCAAAA GTAGGTGGAA GATAAAAACG AAGCAAGGAA AAGCGATAAA GCCCAGTGCT
  GGTTTTTTAT TCCGTTTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352049350	MGP_WTSI_1_158870656	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254499938					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352049350	MGP_WTSI_1_158870656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156768095 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	330 bp downstream
Cpgi904	CpG island 904	296 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	899 bp upstream
Rr19959	regulatory region 19959	906 bp proximal
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	1526 bp downstream
Tssr9581	transcription start site region 9581	836 bp downstream
Tssr14475	transcription start site region 14475	1716 bp upstream
Tssr14476	transcription start site region 14476	1672 bp upstream
Tssr14477	transcription start site region 14477	976 bp upstream
Tssr14478	transcription start site region 14478	910 bp upstream
Tssr14479	transcription start site region 14479	868 bp upstream
Tssr14480	transcription start site region 14480	485 bp upstream