rs254500945 SNP Detail

Summary

• ID
  rs254500945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44500845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTGTGA GTGACAGGAG
  CTTGCAAACT GCATCCATAT TTCTCTTCAC TGTGGTCCTG GCGGGCTTAA GTTGCTCCAG
  TGATGGGGTG CTCACCACCT CTCAGTTCTC AGCTGCCTGG GAGCCAGTGA GTGGTCCAAG
  GTCACACTAA ATCATGGTGG GACTCCAGAT CCTTGTGCGT CAGTTCTGTC TGATGGGGAG
  W
  CAGGCAGCAG AGTAGCTGTC ACAAGCTCTC CAAGCACCAC AGAGCCCTGC ACGGCAGGGG
  CTGAGGAGAT GTAGAAGCTG AAGCTGTGAT TCTGGGCACA GAGCAGCTTG CATCTTCCTG
  TGCCCACCTT CAGTCCAGAG CTCATCTCTC TCCTGAAAGA ATGATCCCAG AGAAGGCGGC
  ATCTCCCTCA CCTAGTGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164949	MGP_WTSI_7_52106791	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254500945					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164949	MGP_WTSI_7_52106791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44500845 () rs orientation: forward

Symbol	Name	Function Class
Akt1s1	AKT1 substrate 1	within coordinates
Cpgi18996	CpG island 18996	764 bp distal
Cpgi18997	CpG island 18997	1215 bp proximal
Gm57218	predicted gene, 57218	1842 bp downstream
Mir707	microRNA 707	1650 bp downstream
Rr646238	regulatory region 646238	1404 bp distal
Rr646239	regulatory region 646239	1465 bp distal
Rr646240	regulatory region 646240	within coordinates
Tssr66437	transcription start site region 66437	1792 bp downstream
Tssr66438	transcription start site region 66438	1395 bp downstream
Tssr66439	transcription start site region 66439	1029 bp downstream
Tssr66440	transcription start site region 66440	1007 bp downstream
Tssr66441	transcription start site region 66441	1355 bp upstream
Tssr72237	transcription start site region 72237	1554 bp upstream