rs254515309 SNP Detail

Summary

• ID
  rs254515309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55969410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATAATTG TTATAAAGTT GAACTGTGAA
  ATATGTTCAC GGAAACATTT TGCTTGCATT AATGCTTTAC ATCTTGCATT TATATTAAAA
  ATTCACACAC AAATGTACGT GGAGAAACTG CCAATACCTG ATTCTGCCCC CTATGTTTCC
  W
  CTCGCAATCA TATATGTAGG TACCTTTGAC CCCCATGGAA AAATTTCTAA CATTCAGAAC
  TGATAACCGG AAGAAAAATT CTTTTGAGAA TGAAATGTTT CCCCTCAGTG GGCTCTTAAG
  CACGTTCTCC TCATACGCGG CGTGCTAGCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325191243	CHEV_16_56149160	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254515309					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55969410 () rs orientation: forward

Symbol	Name	Function Class
Gm49682	predicted gene, 49682	119 bp downstream
Rr318787	regulatory region 318787	1010 bp distal
Rr318788	regulatory region 318788	191 bp proximal
Senp7	SUMO1/sentrin specific peptidase 7	within coordinates