rs254517232 SNP Detail

Summary

• ID
  rs254517232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65369125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTTTTC CCAGGGAGTT
  AGAAGTTAGG GGCTGATGTT GTTTTGTCTC CATCTGCAGT GGTCTAGCTT CTCTTTTTGC
  AAGGATTCTG CACATTGGGA AGCCGTCTAA TAGCTGTGTA TGAGTTTTCA AAAAGATTTT
  ACACCAGAAC CTTGAAACGA GTGGTCAGAG AGAAAGATGT GCGGGCAGCG TCTCCTCTCA
  Y
  GATATTTAGA GAGAAGTGGA TAGGTTCCTG GAGAAAGGAT AAATCTTACC TGAAGAAATC
  TCCAAAAAGA TGGCTATTTA ATACATATAG GTGTGGTGAA GGATGAAGAT GTGTAGTGAA
  CAGCCCGCCG CAGGGCCTTA GGTGTAGTTC AGTGGTAAAA GCCCATGGTG AGCGTTCCCC
  AACACCGAGA ACCATAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377865481	MGP_WTSI_9_65309650	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254517232					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377865481	MGP_WTSI_9_65309650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65369125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	389 bp distal
Gm47270	predicted gene, 47270	1444 bp downstream
Rr401463	regulatory region 401463	795 bp downstream
Spg21	SPG21, maspardin	within coordinates
Tssr2916	transcription start site region 2916	926 bp downstream
Tssr85703	transcription start site region 85703	860 bp downstream
Tssr85704	transcription start site region 85704	850 bp downstream
Tssr85705	transcription start site region 85705	492 bp downstream
Tssr85706	transcription start site region 85706	695 bp upstream
Tssr85707	transcription start site region 85707	822 bp upstream
Tssr85708	transcription start site region 85708	952 bp upstream