rs254517368 SNP Detail

Summary

• ID
  rs254517368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23716614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATCACA GAAATTCAGG
  GTGTTAATGT GATGTTTATT TAACACTTTG TGTGTGTTAC TAGGTGAATG AACAGTTTAC
  AGGATTTTGG GTCTCCTTCC ACCGAGGGAT CCAACTCAGC TTAACAGGTT TTGCAGAAAT
  ACTTTTCCTC ATTGTTCAGC CTTCTGACTG TTTCTCGTCA TCGTCATCAT GATACCACCA
  M
  CACTTTTTTT TCTTTTTCTT TTTTGAGACC GTGTTTCTCT GGGTAGCACT AGATGCCCTT
  GAACTCTGTG GACCCGGCTG GCCTCGAACT CCAGATATAC CCTTGCCTCT GCCTCCCGAG
  TGCTGGGATT AAAGACCTAC CCCAGCACCT CCTGTTTCTC ATCTTTACTT TTAAAGATTA
  GGGTTTCTGT GGGTAAGCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984330	MGP_WTSI_13_23624313	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254517368					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984330	MGP_WTSI_13_23624313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23716614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	570 bp distal
Gm11335	predicted gene 11335	1516 bp upstream
Gm55640	predicted gene, 55640	1670 bp downstream
Gm60769	predicted gene, 60769	1077 bp downstream
H2ac10	H2A clustered histone 10	1462 bp upstream
H4c8	H4 clustered histone 8	966 bp downstream
Rr403647	regulatory region 403647	1197 bp upstream
Tssr4007	transcription start site region 4007	1241 bp downstream
Tssr118826	transcription start site region 118826	1356 bp downstream
Tssr118827	transcription start site region 118827	591 bp downstream
Tssr118828	transcription start site region 118828	1425 bp upstream
Tssr121710	transcription start site region 121710	1501 bp upstream
Tssr121711	transcription start site region 121711	1478 bp upstream
Tssr121712	transcription start site region 121712	1212 bp downstream