rs254519383 SNP Detail

Summary

• ID
  rs254519383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80639412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGCC AGGCCTTGTG
  TTGAGGAACC CTGTTCTGTT GTGCACACAC AGCACATAAC AGCCCCATCC CTTCTGTTGC
  AGTGACCAAG CAGAGGGACA CAGAGATGGG CCAGCAGAGC CTGCTGTTCC AGGTGAGGTG
  GGACCAGTCA GGGGTGGACC AGACACACGG GTGGTGATGC CAATAGTGCT GTGCATGTTT
  Y
  ACAGATTGAC TACCCTGAGA TCGCAGAGGG TATCATGCCA CGCCACCGTT TCATGTCTGC
  TTATGAGCAG AGGATCGAGC CTCCAGACCG CCGCTGGCAG TACCTGCTCA TGGCTGCTGA
  GCCCTATGAG ACCATTGCTT TCAAGGTAGC GACCCTACAG GACAGAGAGA GCAGCTAAAT
  TCAGCTGTCT GTGTATCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025276	MGP_WTSI_10_80266323	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254519383					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025276	MGP_WTSI_10_80266323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80639412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Amh	anti-Mullerian hormone			1665 bp upstream
Rr366747	regulatory region 366747			1373 bp upstream
Rr435397	regulatory region 435397			1069 bp proximal
Sf3a2	splicing factor 3a, subunit 2			Intron
				Splice-Site
Tssr94612	transcription start site region 94612			1175 bp downstream
Tssr94613	transcription start site region 94613			756 bp downstream
Tssr94614	transcription start site region 94614			286 bp downstream
Tssr94615	transcription start site region 94615			23 bp upstream
Tssr94616	transcription start site region 94616			67 bp upstream
Tssr94617	transcription start site region 94617			85 bp upstream
Tssr94618	transcription start site region 94618			459 bp upstream
Tssr94619	transcription start site region 94619			490 bp upstream
Tssr94620	transcription start site region 94620			522 bp upstream
Tssr94621	transcription start site region 94621			546 bp upstream
Tssr94622	transcription start site region 94622			633 bp upstream
Tssr94623	transcription start site region 94623			1142 bp upstream
Tssr94624	transcription start site region 94624			1655 bp upstream
Tssr98515	transcription start site region 98515			449 bp downstream