rs254521697 SNP Detail

Summary

• ID
  rs254521697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6951671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTTACT GGGTGAACTA
  GCTTGCTGTC CCTACAGCAG AACAGGCAGG GGTCCCAATA AACGCTCATT TGGGGTCAAC
  TGCTATTATT ACCTTTATCA TTGTGAGTTT TGGCTTCCCC ACATGCTAGC TCTTTGCACC
  CGAGTTTCCT CCTTTGCACA CGCTCAAGCT GCGGGGCGCC CAGGGCCTCG CCCAGCACAA
  Y
  CCTGCCAGCT CAGAGGGGCG CGCCCCAAAC AAGTTTGCGC TTCAATGCGG GCTCTGCAGC
  TGGGAGGGGC AGCATCGACG AGCCGCTGAC TACATTGCCC ACAATACCAC GCGCGCCGCC
  ATCTCAGCCG GTGGGCGGTG GTCGTCCCAG TCCTGGCTAT TGTAAGCCAA ACGGCCAAAT
  CTACACGCCC CCACCCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683894	MGP_WTSI_19_7048793	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254521697					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683894	MGP_WTSI_19_7048793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6951671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	within coordinates
Plcb3	phospholipase C, beta 3	within coordinates
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	745 bp upstream
Rr370444	regulatory region 370444	1671 bp upstream
Rr543522	regulatory region 543522	175 bp proximal
Rr543523	regulatory region 543523	885 bp proximal
Tssr154704	transcription start site region 154704	310 bp upstream
Tssr154705	transcription start site region 154705	648 bp upstream
Tssr154706	transcription start site region 154706	745 bp upstream
Tssr154707	transcription start site region 154707	773 bp upstream
Tssr154708	transcription start site region 154708	808 bp upstream
Tssr154709	transcription start site region 154709	819 bp upstream
Tssr154710	transcription start site region 154710	835 bp upstream
Tssr154711	transcription start site region 154711	909 bp upstream