rs254526470 SNP Detail

Summary

• ID
  rs254526470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24656967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCAGCAC GCGGTTCTTG
  GGGGTGGAGG CTAAGGCGCT TGCGAGAGAG GAGGGGCGGG GGCGCAGGGC GACGCTGGAG
  GGGCGGGGGC GGCTGGGAGG GGGCTAGGCT GCGTGTGCCG GAGCCGGCGG GGGCGGCGGT
  GCGTGCGCAT GACGCGGGGG GAGGGCCCGG GCCGCGCGCT CCCGGTCCCG TTGTTGTTGC
  Y
  GCTGGAGGCA GCTCCGAGGC GGCGGGATCT CAGCGCGGGT AAACGCCGGG CGGCGGCCCC
  AGCGTGCGCG GCCGCGCCTT CTGGCCTCGG CTCCGGGCCT CATGCGCTAG ACCGGCGCCG
  CGCGCTTAGT AGTTAGGGTT CCGCCAGCCC CGCGCGCCTG GTCGCTGCCG CCGCCGCCGC
  CGCCGCGCCG CCCCAGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364289754	MGP_WTSI_5_23957787	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254526470					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364289754	MGP_WTSI_5_23957787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24656967 () rs orientation: forward

Symbol	Name	Function Class
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	208 bp upstream
Cpgi15603	CpG island 15603	within coordinates
Gm10472	predicted gene 10472	260 bp upstream
Rr608324	regulatory region 608324	within coordinates
Rr608325	regulatory region 608325	1124 bp proximal
Rr608326	regulatory region 608326	1595 bp proximal
Tssr45426	transcription start site region 45426	within coordinates
Tssr45427	transcription start site region 45427	4 bp upstream
Tssr50327	transcription start site region 50327	223 bp upstream