rs254526704 SNP Detail

Summary

• ID
  rs254526704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69814843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACATGA AAAGCATGCT
  TCATGGACAT TAACAAGCCA CAAGCCACTG TAATCTCATT TACAGGAGGT CATGGCGGAT
  CTTAGGTAAC CAATATCACA GGGCAGAACA AGCTCTTGGG CAGAGCTGAG AAGTATCTCA
  TCCTCCAGCC GCTGGAGGAA GGACATCAGC AAGGCCCTGC CCACCACTGT ACAGCTCTGA
  R
  CTGTCAGGCA TTCTCCATGT TTCCCCAGCC AAAGGCAGAC CCCCACCCCC ACCCCCTTCC
  TCTCCAGGAA CGGAGTAGAA GAATCCCACA GCACAATCGG CTCCTGGGAT AATAGCATCT
  TTCTAGCTGG CCAATCAGAG ATTCAATAGG TTTTATGTGT AGCTTTCTCT TTAAGAGTTC
  CCTTCTTCTG GGAAAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085524	CHEV_12_70869056	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254526704					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69814843 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467132	regulatory region 467132	1400 bp distal
Rr467133	regulatory region 467133	278 bp distal
Tssr116524	transcription start site region 116524	777 bp upstream
Tssr116525	transcription start site region 116525	1234 bp downstream
Tssr116526	transcription start site region 116526	1664 bp downstream