rs254529455 SNP Detail

Summary

• ID
  rs254529455
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cttaatagc ctcagggggc aggagtcggc
  caaaaggggg actagatctt ggtggctggc tttaggaatg taatggaacg gtttttaaca
  aggaagatgg gctaggagaa ggcaaggcct gccagagcca tgcctgccat gctcagctct
  K
  ctagagcccc tCAGAATCGA CCTGACTCTG CTGAGTATTT CAGAGTGGCA ATTGTCCCAG
  AAGACTTAAT GCTCTTTCCA AAAGTGACAC ATTGTTAATC TTCATAGTAG GCATATTCAG
  GGTCACTAAT TAAAGAGCCC AAAAGAGGAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111979	CHEV_1_172573781	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254529455					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	520 bp proximal
Olfml2b	olfactomedin-like 2B	882 bp upstream
Rr14047	regulatory region 14047	1019 bp distal
Rr28935	regulatory region 28935	181 bp proximal
Tssr280	transcription start site region 280	694 bp downstream
Tssr9927	transcription start site region 9927	799 bp downstream
Tssr9928	transcription start site region 9928	799 bp upstream
Tssr9929	transcription start site region 9929	840 bp upstream
Tssr9930	transcription start site region 9930	873 bp upstream
Tssr9931	transcription start site region 9931	922 bp upstream
Tssr9932	transcription start site region 9932	939 bp upstream
Tssr9933	transcription start site region 9933	1135 bp upstream
Tssr14922	transcription start site region 14922	678 bp downstream
Tssr14923	transcription start site region 14923	729 bp downstream