rs254529773 SNP Detail

Summary

• ID
  rs254529773
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCAGGC CAACCATAAC
  TAAACTGTGA GTTCATGTGT CAACATCCTA AAACTGGAAG ATAAATCTCT AAGAGTTGAT
  TTTCACATAG CCTTATAAAT ACCTCTATTA GAAAAATCAC TTAGGTTGCC TCATCCATCT
  TTCATTTTCA AAAGCACATT TTCTATATAT GCATAGCATT GGAGAAAGAT TCATTTTAAT
  M
  TTTCTCAGTA GAACACAATT TAAATGAAAC TCTAACTTCA ATCTTATCTT GAATTCTTAG
  AAGCATTAAA CACTAATAGC ATGAAGAGGT AACATTTCTG ATTAGTCCTG ACCACATATA
  GCTTTTCCTC TAAGAAAAGA ATTTCTTAAT TTGCTTCTTA TTTATAAGGA AAATGCTCAG
  ACAAAACAAT AACTTGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044830	CHEV_6_142420595	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254529773					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417801 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	723 bp downstream
Tssr63951	transcription start site region 63951	738 bp downstream
Tssr63952	transcription start site region 63952	769 bp downstream
Tssr63953	transcription start site region 63953	822 bp downstream
Tssr63954	transcription start site region 63954	885 bp downstream
Tssr63955	transcription start site region 63955	914 bp downstream
Tssr63956	transcription start site region 63956	1000 bp downstream