rs254532241 SNP Detail

Summary

• ID
  rs254532241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCTGTG TGAGCAGAGA
  GAAAAGCGTC AGCGTTCAGT GTATTGGATT TACGATCTTC AACAGGAAAC CCGCTGGGTA
  CGGCGGCTGT GAGGACATTA GGAGGCTTTC CACCATAATG GGGTTGTTGG TTTGCTGAAT
  CTAGAGAGAA TGAGTCTTCA GGAGATGTTA GGAATGGCTG TGACTGGAGG GCAGTGGTAA
  Y
  TGTCCAAAAG TAATCCCTTG CCTGTACAGA GGAAGGAGCT GACCTGTCAT TCATATGTCC
  AGTTAGCTGA GCAGTGGAGT TATCAGTAGA ATTGCTTTCT GGTAGACTTA GTTTGTACAC
  GTAGTCCCAA TAATCATATG ACCTGGAGGA ATCAAAATTA TATCTACATA TACTGCGATT
  GTCCATAATG AACAGATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914790	MGP_WTSI_6_122800593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254532241					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914790	MGP_WTSI_6_122800593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827534 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58711	transcription start site region 58711	66 bp downstream
Tssr58712	transcription start site region 58712	within coordinates
Tssr58713	transcription start site region 58713	56 bp upstream
Tssr62975	transcription start site region 62975	1964 bp upstream
Tssr62976	transcription start site region 62976	1875 bp upstream
Tssr62977	transcription start site region 62977	1817 bp upstream
Tssr62978	transcription start site region 62978	1763 bp upstream
Tssr62979	transcription start site region 62979	1730 bp upstream
Tssr62980	transcription start site region 62980	1714 bp upstream
Tssr62981	transcription start site region 62981	1695 bp upstream
Tssr62982	transcription start site region 62982	1536 bp upstream
Tssr62983	transcription start site region 62983	1078 bp upstream
Tssr62984	transcription start site region 62984	982 bp upstream
Tssr62985	transcription start site region 62985	943 bp upstream
Tssr62986	transcription start site region 62986	648 bp upstream
Tssr62987	transcription start site region 62987	522 bp upstream
Tssr62988	transcription start site region 62988	456 bp upstream
Tssr62989	transcription start site region 62989	296 bp upstream
Tssr62990	transcription start site region 62990	243 bp upstream
Tssr62991	transcription start site region 62991	214 bp upstream
Tssr62992	transcription start site region 62992	164 bp upstream
Tssr62993	transcription start site region 62993	71 bp upstream
Tssr62994	transcription start site region 62994	within coordinates
Tssr62995	transcription start site region 62995	107 bp downstream
Tssr62996	transcription start site region 62996	167 bp downstream
Tssr62997	transcription start site region 62997	309 bp downstream
Tssr62998	transcription start site region 62998	364 bp downstream
Tssr62999	transcription start site region 62999	435 bp downstream
Tssr63000	transcription start site region 63000	492 bp downstream
Tssr63001	transcription start site region 63001	515 bp downstream