rs254532438 SNP Detail

Summary

• ID
  rs254532438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72569099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAGGCCT CCCGGTTGTT
  GCCCGAGAAG GCCTTAATCT CCTTAGCTAT CTCGCGGCCC CTGCAATCGG ATTTTGAGAG
  TCTAATTTCT GCAGTATTTT CCCACTATAG AAAAACATGC TATGCTTTTG GCCTGTAATG
  TAGGCTCAGG GCCGTGAGTC AGAACGATGC AGAGCTGGAG GCTAGCCTGT GAGCCCCGAC
  S
  AGCCATGTCT CAAAACCTCG GAGCAGCGGC TGTCTTCTTC CCACCCCCAC CTTTTCTTCA
  GGGCCTCGCT GCCGCGCTGT CGGCGGAGGC TCAGCTATGC AGGTTTGGAT GGCCGACTCC
  GCCAGCCTAG TGGCTGGCCT TGAAGCCGAC ACCCCCCCAG ATTTAGGCCT GCGCATTCCT
  TCCCGGGTCC TATGGCGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378022958	MGP_WTSI_9_72509624	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254532438					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378022958	MGP_WTSI_9_72509624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72569099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	529 bp upstream
Rr401510	regulatory region 401510	1367 bp downstream
Rr682796	regulatory region 682796	1181 bp distal
Rr682797	regulatory region 682797	39 bp proximal
Tssr86018	transcription start site region 86018	164 bp upstream
Tssr86019	transcription start site region 86019	584 bp upstream
Tssr86020	transcription start site region 86020	603 bp upstream
Tssr86021	transcription start site region 86021	656 bp upstream
Tssr86022	transcription start site region 86022	1938 bp upstream
Tssr90495	transcription start site region 90495	1433 bp downstream
Tssr90496	transcription start site region 90496	1469 bp downstream
Tssr90497	transcription start site region 90497	1487 bp downstream