rs254539119 SNP Detail

Summary

• ID
  rs254539119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76114619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAAAGG GCTTCTGGGG
  TACCCTGTCT CTACCCTCAC CCCTGTCTTT AAAGGTCTGA GGTAGTGAAG GGTATTCAAA
  AGTCCACGTG GGAAAATAAC CCATTTTATA AATCATCAAT TGTGTGTGTG TGTCCTGCAC
  ATGCTCTCAG ATCAGGAATA GTCTGGGGGG GGGATATGTC TTTTTTCTGT CCCCTTCCAT
  Y
  TCCACAAGCT ACTGCTATGC TTCCACCAGC AAAGTTCCTG GAGACTGTAC CATCTCCATG
  CTCACTCAGC ACCTGGCCTT TCAACTCTCC AATCTACCCT TACCACCTCC TGCATTTCAA
  ATGCCTCATC ATCTCCTAGA GGACAGCGTC AGTGTTCCTT TCCCAGGGCA TCCCACCCAA
  TGGCCTCCAG CCTTACGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611230	MGP_WTSI_15_76060849	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254539119					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611230	MGP_WTSI_15_76060849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76114619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7220	CpG island 7220	529 bp distal
Cpgi7221	CpG island 7221	1436 bp proximal
Plec	plectin	within coordinates
Rr504677	regulatory region 504677	933 bp distal
Rr504678	regulatory region 504678	432 bp distal
Rr504679	regulatory region 504679	580 bp proximal
Rr504680	regulatory region 504680	949 bp proximal
Tssr134944	transcription start site region 134944	908 bp upstream
Tssr134945	transcription start site region 134945	879 bp upstream
Tssr134946	transcription start site region 134946	1627 bp downstream
Tssr134947	transcription start site region 134947	1642 bp downstream
Tssr134948	transcription start site region 134948	1660 bp downstream