rs254539533 SNP Detail

Summary

• ID
  rs254539533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCGTGG TGGCGCACGC
  CTTTAGTCCC AGCACTTGGG AGGCAGAGGC AGGCGGATTT CTGAGTTCGA GGCCAGCCTG
  GTCTACAGAG TGAGTTCCAG GACAGCCAAG GCTACACAGA GAAACCCTGT CTCAAAAAAC
  GAAAAAAGAA AAAAAAACAA AAACTTTAAG CAGGGCGTGA TTAAATAGTG AGACACGACC
  R
  GTGTGCCAGG GCGTCCAGTA CATACAAACT TCCCGGATAC CAGTCTGATC GTGGAGAGCC
  TTTCGTTTAT TTGTTTGTTA GTTTGTTTGA GACAGGGTCT CACCATTGTA ACCCCTGGGT
  GGCCTGGAAC TCACTATTTA GACCAAGTTG GCCTCGAACT CATCGAGATC TGCCTCCCGA
  GTACTGTGAT TTAAGGCGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788699	MGP_WTSI_11_69496029	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254539533					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788699	MGP_WTSI_11_69496029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	234 bp distal
Rr450067	regulatory region 450067	692 bp distal
Rr450068	regulatory region 450068	469 bp distal
Rr450069	regulatory region 450069	within coordinates
Rr450070	regulatory region 450070	415 bp proximal
Rr450071	regulatory region 450071	1306 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	443 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	319 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	50 bp downstream
Tssr102519	transcription start site region 102519	1796 bp upstream
Tssr102520	transcription start site region 102520	1828 bp upstream
Tssr102521	transcription start site region 102521	1869 bp upstream
Tssr102522	transcription start site region 102522	1962 bp upstream
Tssr108773	transcription start site region 108773	1862 bp upstream
Tssr108774	transcription start site region 108774	723 bp upstream
Tssr108775	transcription start site region 108775	671 bp upstream
Tssr108776	transcription start site region 108776	631 bp upstream
Tssr108777	transcription start site region 108777	574 bp upstream
Tssr108778	transcription start site region 108778	546 bp upstream
Tssr108779	transcription start site region 108779	522 bp upstream
Tssr108780	transcription start site region 108780	448 bp upstream