rs254543725 SNP Detail

Summary

• ID
  rs254543725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32250856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCTTAC TACGTATGCA
  GTAAACGAGC TAAAGTTTGA AAACTGGGTG TGGTGATACA CAACTAGAAT TCAGACACCC
  AGGAGGCTGA GACAAGTATT TTCAGTTGGG CTTAAAAATT TTGGTGGACT TAAAGTGTTT
  TGGTTTTGTT TCTTTGCTCT TGCTTGTGAG TTTGTTTCTT CAAGTCAAGG TGTCTCTATG
  Y
  AGCCCTGGTT GTCCTGGAAC TCCCTCTGTA GACCGGGCTG GCCTTGAACT CAGAGATCTG
  CCTATTTCTG CCTCACCAGT GCTGGCTCTG AGGCATTAAT ACAGGATCTC ACTATGTATA
  GCCACTGACC TGGAACCATC TAGACCAGGG TGGCCTTGAA CTCACAGAGA CTCCTGGCCT
  CTGCCTCAAG ATTAAAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395858358	MGP_WTSI_16_32432124	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254543725					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858358	MGP_WTSI_16_32432124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32250856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	389 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	982 bp downstream
Rr514695	regulatory region 514695	1370 bp distal
Rr514696	regulatory region 514696	779 bp distal
Rr514697	regulatory region 514697	1289 bp distal
Rr514698	regulatory region 514698	176 bp distal
Rr514699	regulatory region 514699	1999 bp proximal
Tssr137979	transcription start site region 137979	1420 bp downstream
Tssr137980	transcription start site region 137980	1060 bp downstream
Tssr137981	transcription start site region 137981	1048 bp downstream
Tssr137982	transcription start site region 137982	1004 bp downstream
Tssr137983	transcription start site region 137983	984 bp downstream
Tssr137984	transcription start site region 137984	936 bp downstream
Tssr137985	transcription start site region 137985	758 bp downstream
Tssr137986	transcription start site region 137986	730 bp downstream
Tssr140804	transcription start site region 140804	921 bp upstream