rs254546308 SNP Detail

Summary

• ID
  rs254546308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95723018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCGTCC CCTCCCCCCC
  CGCACCCCTC CCCCCTTGCA TTCCCCTTTG CCCTTATGGA ACAGAAAGCC ATGTTTTTAA
  GCAGAGCCAG GGAAACCCAA GCCCTTCCCC TCTCTGGAGT TTCAGACCAA TAAAGGAGGT
  GAAGGGGGAC AAAGGGACTT GTTCTCTTGT GCCACAGTGA GAAGGGGGGA TGAAAGAGAG
  R
  TGCTCTCTGC TCTCAGGGAG TCCTATTTAA GTAGTGAGGG CGTGAAGAGC CCAGCGAATG
  GCTGCTTGTG ACGTCAGGGG CCTAATGGGA AGAGTAAAGA GGGTTGAGAT TGAGAGTCCT
  TCTGGGGCAG ACTGCAGGGC TTCCGTGTTC CCTTTCCATC ACTCCCTGTC TGGCCTTCTA
  GCCCTTTGGA GCAACTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384356231	MGP_WTSI_11_95693506	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254546308					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384356231	MGP_WTSI_11_95693506	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95723018 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	627 bp distal
Cpgi3604	CpG island 3604	1479 bp proximal
Phospho1	phosphatase, orphan 1	52 bp downstream
Rr369341	regulatory region 369341	996 bp upstream
Rr455202	regulatory region 455202	1490 bp distal
Rr455203	regulatory region 455203	279 bp distal
Tssr3654	transcription start site region 3654	1648 bp downstream
Tssr104394	transcription start site region 104394	1424 bp downstream
Tssr104395	transcription start site region 104395	855 bp downstream
Tssr104396	transcription start site region 104396	819 bp downstream
Tssr104397	transcription start site region 104397	654 bp downstream
Tssr110283	transcription start site region 110283	369 bp upstream
Tssr110284	transcription start site region 110284	1924 bp downstream
Tssr110285	transcription start site region 110285	1943 bp downstream
Tssr110286	transcription start site region 110286	1976 bp downstream