rs254546468 SNP Detail

Summary

• ID
  rs254546468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16237084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGGGAA GGAAATTCAA
  TAAAAATGCC AAAATTATAA TTGGACTGAC TTTCTTTGTT TTTGCCAACA GGTAAGAAAG
  TAACATTACC AGTTTCTAGG GACATTTTAA CATTTTCTTT TTTTCGGGAG GGGCAGCAGT
  CTTGCAACTG TTTCTCTTTC CGAAGGCTAT TTTATTCAAT AAAAACCAAC CCCATCCCAG
  Y
  AGAGAGTTAG AAAGCATTCA TTGAGAGCGT GCTCCCGCAC CCCGCACGCA CGCACGCACG
  CCCGGTGGTG GCTGAGCGGA CAGGCGCTGC TGGACCGCTT CTGTAGCCTC CAGGCTAACA
  ACGCCCGAGC CCAACGCTCA CGGTACCGCG CATGCGTCTA AAGTACAGCT GCGCCTCCGG
  GTCTCTGCCC CCCTCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357084028	MGP_WTSI_3_16082920	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254546468					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357084028	MGP_WTSI_3_16082920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16237084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	within coordinates
Gm64384	predicted gene, 64384	within coordinates
Rr397612	regulatory region 397612	64 bp upstream
Rr573790	regulatory region 573790	within coordinates
Rr573791	regulatory region 573791	327 bp proximal
Rr573792	regulatory region 573792	788 bp proximal
Tssr833	transcription start site region 833	693 bp downstream
Tssr28473	transcription start site region 28473	257 bp upstream
Tssr28474	transcription start site region 28474	288 bp upstream
Tssr28475	transcription start site region 28475	377 bp upstream
Tssr28476	transcription start site region 28476	944 bp upstream
Tssr32661	transcription start site region 32661	722 bp downstream
Tssr32662	transcription start site region 32662	913 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	292 bp upstream