rs254547147 SNP Detail

Summary

• ID
  rs254547147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13336500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAGACT AGCAGAACTC
  CTTCAGGGAC AACCTTTTAG GGGGACATTC TCTGCCTAAC AGTTCCAATG ACTTATCTGC
  ATCAATTTCA GATGTTTCAA AACTAAATTT ACAGTAGACT GCTGCTAGAA GTGCCCGTAG
  CCACTGATTT ATGTTTTCAT AGTCTCCCAC AGAGCTCAAC ACAGTTCCTC ACATACAACA
  R
  CAGCTGTTTA GAATTGTTTC AGCAGGTGAC AATCAGTAAA GAGATACAGG ACAAGTGGAC
  CTTCCAAACA ACAGAAGCTG GTACGAAAAG TTTCATACAC TTTATGTTAT CTTGTGAAGA
  ATAACACACA ACCTAGGCAC AAGAGTGCTC CCATATAAGA TTTTAGAAAG CATCTGTAAA
  ATGTCCTTCC ACAGACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505820	CHEV_8_13286500	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254547147					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13336500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530085L11Rik	RIKEN cDNA 9530085L11 gene			within coordinates
Cpgi20111	CpG island 20111			578 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr659903	regulatory region 659903			380 bp proximal
Rr659904	regulatory region 659904			900 bp proximal
Rr659905	regulatory region 659905			1323 bp proximal
Rr659906	regulatory region 659906			1722 bp proximal
Tmco3	transmembrane and coiled-coil domains 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr76388	transcription start site region 76388			1387 bp upstream
Tssr76389	transcription start site region 76389			1673 bp upstream
Tssr76390	transcription start site region 76390			1737 bp upstream
Tssr76391	transcription start site region 76391			1783 bp upstream
Tssr80437	transcription start site region 80437			1314 bp downstream