rs254552980 SNP Detail

Summary

• ID
  rs254552980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7630312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGCCTTG CAGCCAAGCC
  GGCCCTGCCC ACTCCCTACC CACACACCCC CTCTTCCTTT TATTTCGCCC TCCCAGCCGG
  TCTCTCAGTT CCCGGGTGTA ATCTTGAATC AGTCTCTAGA GCTGGAGTGA GTACCGATTG
  CACCATTCCC GTCTGGGTGG GTCCTCAGTC TCTCCTTTTC GGCTCCTCTC ACCTCCATCA
  R
  CCTTGCTTTG AAGCTCCAGG CCTTCCTTGT CCATAGCCCT GCCCTCTCCA GCCCCCACCT
  TTTTCAACTT AACGTGCAGT GGTGTGTGTG AGTATGGGAG GGGGGCTGCC TCCTCTCTGC
  CTGGGATTGT GCTGAACTCA GCTACTCTCG GAGCTTCCTC TTCCCGACTT CCTGGGTGGC
  TTTAGAGCCC CATCTGCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403006279	MGP_WTSI_X_7341199	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254552980					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403006279	MGP_WTSI_X_7341199	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7630312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22579	CpG island 22579	1000 bp distal
Rr394688	regulatory region 394688	212 bp upstream
Rr689655	regulatory region 689655	1368 bp distal
Rr689656	regulatory region 689656	within coordinates
Rr689657	regulatory region 689657	25 bp proximal
Tfe3	transcription factor E3	within coordinates
Tssr160423	transcription start site region 160423	1511 bp downstream
Tssr160424	transcription start site region 160424	1384 bp downstream
Tssr160425	transcription start site region 160425	1344 bp downstream
Tssr160426	transcription start site region 160426	1264 bp downstream
Tssr160427	transcription start site region 160427	1236 bp downstream
Tssr160428	transcription start site region 160428	1175 bp downstream
Tssr160429	transcription start site region 160429	1159 bp downstream
Tssr160430	transcription start site region 160430	108 bp downstream
Tssr160431	transcription start site region 160431	177 bp upstream
Tssr160432	transcription start site region 160432	203 bp upstream
Tssr160433	transcription start site region 160433	237 bp upstream
Tssr160434	transcription start site region 160434	250 bp upstream
Tssr160435	transcription start site region 160435	325 bp upstream
Tssr162815	transcription start site region 162815	285 bp upstream
Tssr162816	transcription start site region 162816	1724 bp downstream