rs254556548 SNP Detail

Summary

• ID
  rs254556548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73190726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCATCTTT TAATTCTTAA ATATTAAGGG
  GGAGGGGGAA TCTGTGTTTG CTTTGAAGTC CTGTGCCCAG GTATTTACTG TCAAAAGTTG
  AAAGAAAGGT GAGGTCCCAG CTTCTGCGGA TGGTTTTATT ATCAGGAACA AAGTCCTGAC
  R
  ATGTTAGCGA TATTCATGTA ATGCAACAAC GATAAACACC AGAAAAACAA AATATTTCTA
  TTTTTCCGTT TTAAAATGAG AGGGGGATAA ACTGAACGAC AGAAGCATCA CTATCAATAA
  GGAAAGTTTC TCAAAAGTAA CACACTGGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322260287	CHEV_7_80685864	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254556548					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73190726 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	within coordinates
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Gm44686	predicted gene 44686	within coordinates
Rr380951	regulatory region 380951	334 bp upstream
Rr400364	regulatory region 400364	1643 bp upstream
Tssr67205	transcription start site region 67205	1600 bp downstream
Tssr72948	transcription start site region 72948	1705 bp upstream
Tssr72949	transcription start site region 72949	59 bp upstream
Tssr72950	transcription start site region 72950	107 bp downstream
Tssr72951	transcription start site region 72951	447 bp downstream
Tssr72952	transcription start site region 72952	518 bp downstream
Tssr72953	transcription start site region 72953	741 bp downstream
Tssr72954	transcription start site region 72954	760 bp downstream
Tssr72955	transcription start site region 72955	845 bp downstream