rs254559005 SNP Detail

Summary

• ID
  rs254559005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90809860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGGAGTA AGGGATACCT GATGGGCCCA
  CTCCAAGGTG TCCTTGTGAG GAGTCATGAC ATATGACAGT ACTAGTATAA GGGAGGTTTA
  TTTgaggaga agggagggga acagggactt ggagaagggg tagagacaga cagagtcatg
  W
  ggacagagaa agtagggata gagaaggaca gaaagagaga aagaggCCAG CAGGGAACAC
  ATagggagag agagagagag agagagagag agagagagag agagagagag aggaagaaag
  aggaagagag aggaagagag gagaaaatgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319838254	CHEV_1_92778715	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254559005					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90809860 () rs orientation: forward

Symbol	Name	Function Class
Gm70606	predicted gene, 70606	within coordinates
Gm70611	predicted gene, 70611	884 bp downstream
Rr371697	regulatory region 371697	within coordinates