rs254561562 SNP Detail

Summary

• ID
  rs254561562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46139249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCTCCCT GCTACCCCAT
  CTCCTTCAGT CATGGGAAAG GAAGGCCTGG TGAATCCCGT GAGCAAATCC GACCTGGGGT
  CCCGCGACAC TGAGGACTTA ATCCCTCACT ACTGATCATG GAAACCGCAC GTGTGTCTGT
  CTGCTGCTGC CTCTTAGGAT CACTTAGTGG AGGAGATATA TCTAGTGGAC CAGTGTTTTC
  S
  TTTTAGCCCT CCAGGGTGTA CTTGGAAAGG ACCCTGGGAA GACAGGAAAA GAACAAAGCT
  ATGACAGAGG TCGGATGTAT TGCAATCTGA GCCCTTCTCC TCCACCTGCC ACCCGCTGAT
  TCCCCTCTTT TAGGCTTCAA AAAAAGAATA CCAACACCCC AGAGGTCACT AATAAACAGG
  CACGGGGTGT TTTGTTGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361384348	MGP_WTSI_4_46152121	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254561562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361384348	MGP_WTSI_4_46152121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46139249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	68 bp distal
Ncbp1	nuclear cap binding protein subunit 1	within coordinates
Rr591548	regulatory region 591548	822 bp distal
Rr591549	regulatory region 591549	626 bp distal
Rr591550	regulatory region 591550	within coordinates
Rr591551	regulatory region 591551	524 bp distal
Tssr37109	transcription start site region 37109	728 bp downstream
Tssr37110	transcription start site region 37110	691 bp downstream
Tssr37111	transcription start site region 37111	655 bp downstream
Tssr37112	transcription start site region 37112	455 bp downstream
Tssr37113	transcription start site region 37113	417 bp downstream
Tssr41557	transcription start site region 41557	874 bp upstream
Tssr41558	transcription start site region 41558	785 bp upstream
Tssr41559	transcription start site region 41559	519 bp upstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	555 bp upstream