rs254563426 SNP Detail

Summary

• ID
  rs254563426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31769167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTTGAT CTCTCGATGT
  CGGTTCTAAT TTCAGAATCT GGTAATCGTG GCCTGACTTG TTTTGCAGGT GGAAATGAGT
  TCCCAGCAGT TTCCTCGGTT AGGAACCCCT TCCCCTGGGC TTAGCCAGCC ACCTTCACAG
  ATTGCAAGCA GTGGTTCCGC AGGACTGATA AACCAAGTTG CCACAGGTAA GATAAGTCAC
  R
  GCTCTTTTGT ATTGCTTACT GTTTGAAGAA TGTCACTATC TTCAAATTAG CAAACTCCTT
  TTCATAATTA CTGTCTTATC GACTTTGAGG AAAGGATGTG TCAATACACT TAAAATAAGG
  CATTTCCCTC TCTTTTTTAA AAAATCATTT ATGTATGCTA GGCTAAGTGC AACTTTAGTA
  AACCATACTT GTAAGAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400176115	MGP_WTSI_18_31795768	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254563426					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400176115	MGP_WTSI_18_31795768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31769167 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	659 bp distal
Gm58914	predicted gene, 58914	1130 bp upstream
Rr370349	regulatory region 370349	1497 bp downstream
Rr405571	regulatory region 405571	1670 bp downstream
Rr405572	regulatory region 405572	1016 bp downstream
Rr535278	regulatory region 535278	1924 bp distal
Rr535279	regulatory region 535279	1721 bp distal
Rr535280	regulatory region 535280	1141 bp distal
Rr535281	regulatory region 535281	1633 bp distal
Rr535282	regulatory region 535282	640 bp distal
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	1751 bp downstream
Tssr150349	transcription start site region 150349	1743 bp downstream
Tssr150350	transcription start site region 150350	1724 bp downstream
Tssr150351	transcription start site region 150351	976 bp downstream
Tssr152716	transcription start site region 152716	1303 bp upstream