rs254567021 SNP Detail

Summary

• ID
  rs254567021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181941543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT TAGCCCCTTC ATTCCAAGAG
  Y
  ACCCCCACCC TGTCCCGGTT CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320162407	CHEV_1_184044109	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254567021					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181941543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1142	CpG island 1142	595 bp distal
Gm33725	predicted gene, 33725	within coordinates
Gm39719	predicted gene, 39719	337 bp downstream
Rr407119	regulatory region 407119	1925 bp distal
Rr424858	regulatory region 424858	1963 bp distal
Rr424859	regulatory region 424859	1663 bp distal
Rr424860	regulatory region 424860	within coordinates
Rr424861	regulatory region 424861	63 bp proximal
Rr424862	regulatory region 424862	1167 bp proximal
Rr424863	regulatory region 424863	1431 bp proximal
Rr424864	regulatory region 424864	1815 bp proximal
Rr424865	regulatory region 424865	1909 bp proximal