rs254569646 SNP Detail

Summary

• ID
  rs254569646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:8757463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAATT CCCCATGCTA
  TACACAGCCT GACATTTTTA TATCCCACAA ACAACACTCA AAGAAAATAC AGGAAGCTGT
  ATGTCAGGCT GCAGAGAGAA ATGAGCGTAG CTAAGAGACT GTTGAAAGAA AAACAAAGCC
  ATCATCACAA AAGCACAAAG TACCAAGAAC ATAATACCAC CAAAAATCAA CAACATAATG
  R
  CTCCAGTCAG CACAGACTTT TAAATATTAA CTTTAAATAT AGATGATCTC ACTTCTCCAA
  TTAAATAACA TGCTGGCTTA ATGGATCAAG AAACAAAATC CATCTACCTG TTGCCTACAA
  GAAACACATT TTCAGTTTTA AAGATAGACA CTACACACTG CCTTAGAGTA ACAGGATGGG
  TAAAGACTCT CCAGTCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403018275	MGP_WTSI_X_8468350	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254569646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403018275	MGP_WTSI_X_8468350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:8757463 () rs orientation: forward

Symbol	Name	Function Class
B630019K06Rik	RIKEN cDNA B630019K06 gene	1158 bp upstream
Cpgi22597	CpG island 22597	1154 bp proximal
Gm54079	predicted gene, 54079	within coordinates
Rr689805	regulatory region 689805	668 bp proximal
Rr689806	regulatory region 689806	1718 bp proximal
Tssr160504	transcription start site region 160504	1130 bp upstream
Tssr160505	transcription start site region 160505	1152 bp upstream
Tssr160506	transcription start site region 160506	1219 bp upstream
Tssr160507	transcription start site region 160507	1797 bp upstream
Tssr162869	transcription start site region 162869	1688 bp downstream
Tssr162870	transcription start site region 162870	1714 bp downstream