rs254572523 SNP Detail

Summary

• ID
  rs254572523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110811779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTCAGA ACAAAGAGCG
  GAGGAATGCC TTCAGGGTTC ACTCCTGTAG GTGCTGGGGA GAGTGTGGAC ACCACACTGC
  GGCTTCCATA TGGGAGTGAC AGGAGGGTTC TGCCTACTGG AGTGCAGCTG TGGGCTGGCA
  GGAGCCTCCG GGATGTCAAT TTGCATTGGT AAAGGTATCA CTCTCTGGGG GGTGGGGGGG
  K
  GGGGGGGGGA GCTCTGTGTT CCTGAATCAT GCTTACATCA CTGGAGGAAC TATATAAAGC
  TTCTATTTTT ATACGGTGTC TTAGGCTAAA ACAAGCAGGA AGTGGCTGTT CTGAAGAGAA
  GAGGGAGATA CACATGTATT GCTGGTTTGT GTATGAGTGG TCTCCTTTCG GAGGTAGTCC
  AGTGCAGCCC ACTACAGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	SJL/J
ss378915116	MGP_WTSI_9_110885215	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	SJL/J
rs254572523					SNP	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378915116	MGP_WTSI_9_110885215	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110811779 () rs orientation: forward

Symbol	Name	Function Class
Lrrc2	leucine rich repeat containing 2	within coordinates
Rr198767	regulatory region 198767	1422 bp proximal
Rr207418	regulatory region 207418	222 bp proximal