rs254574724 SNP Detail

Summary

• ID
  rs254574724
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85534385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATTTAA GTATCCAACG
  ATGCCCACTG TCACAACCCA ACAACAGAAC GGGATGAGAG TGTTTACTCC TTAAAGCCAC
  TAGCATTCCT CTTTAGGACG GCTGGAGCTT GGTCCCGGGG AAGGGTCAGA ACTGTAGTCA
  GGCTGTGCTG AAACTCGAGT TAGATAGACT AGCTTTTGTT ACCATTCAAC CCCAAGCCAT
  W
  GGCAGACTGC CCAGACTGCA GCTGGTGAGC AACCTACAGG ACCAACCCTT CCTGATGCTT
  CGAAGGTTTC TTCCTTCTTA GGAGCCTGGC TGCAGGGACG CATCTTTCAA TATTCCTTTA
  CAGCTTCACC CAGATTCTTC TCACAACTGC TTTTCTCTAA CATCCAGGCT GGCTGCGAGG
  ACAGCTCCCG CAGAGATGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386736589	MGP_WTSI_12_86828561	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254574724					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386736589	MGP_WTSI_12_86828561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85534385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	1137 bp distal
Cpgi4900	CpG island 4900	482 bp distal
Gm56541	predicted gene, 56541	1518 bp upstream
Gm60138	predicted gene, 60138	within coordinates
Rr369567	regulatory region 369567	536 bp downstream
Rr403417	regulatory region 403417	161 bp upstream
Rr469911	regulatory region 469911	1600 bp distal
Rr469912	regulatory region 469912	1179 bp distal
Rr469913	regulatory region 469913	419 bp distal
Rr469914	regulatory region 469914	3 bp distal
Rr469915	regulatory region 469915	within coordinates
Rr469916	regulatory region 469916	200 bp proximal
Rr469917	regulatory region 469917	312 bp proximal
Tssr3900	transcription start site region 3900	230 bp downstream
Tssr114406	transcription start site region 114406	1362 bp downstream
Tssr114407	transcription start site region 114407	1321 bp downstream
Tssr117091	transcription start site region 117091	1804 bp upstream
Tssr117092	transcription start site region 117092	1672 bp upstream
Tssr117093	transcription start site region 117093	1645 bp upstream
Tssr117094	transcription start site region 117094	1617 bp upstream