rs254576295 SNP Detail

Summary

• ID
  rs254576295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTTACT ATGTAGACCA
  GGCTGGCCTC AAACACACAG AGATCCACCT GCCTCTGCCT CCTGGCTCCT GGAATCATAG
  GCATGTGTCA CCGACTATTT GTCTGCTTTT AACATGCAAA GTTGGAAACT CCATACGGTT
  CAGCTTAACA TAAAGATGAG AAGAACAAGT TTGTGTCACT AGAGACTTAG GATTTAGGAG
  R
  AAAATAAGGT AAACACCAGG ATGCTCAGAG TGAGGATTGA CAACCAGCTT TACAATGGGA
  CAGCTGATTT GAAACCACGG TTTTCCTGGG TGAGTTTTAA GGGCAGTTGG CAAAAGACGT
  AATGGCCGGC TCTCTGCCTA GTTTACATGC TGAAGGGAAA GCCGTGAGCG AGCACTGTGC
  ATGTGCTACG TGCTGATTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628311	MGP_WTSI_16_22893387	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254576295					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628311	MGP_WTSI_16_22893387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712064 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Rr513334	regulatory region 513334	1905 bp distal
Rr513335	regulatory region 513335	1265 bp distal
Rr513336	regulatory region 513336	668 bp proximal
Rr513337	regulatory region 513337	1017 bp proximal
Tssr4818	transcription start site region 4818	490 bp downstream
Tssr137555	transcription start site region 137555	1980 bp downstream
Tssr137556	transcription start site region 137556	1919 bp downstream
Tssr137557	transcription start site region 137557	1263 bp downstream
Tssr137558	transcription start site region 137558	733 bp downstream
Tssr137559	transcription start site region 137559	537 bp downstream
Tssr137560	transcription start site region 137560	494 bp downstream
Tssr137561	transcription start site region 137561	469 bp downstream
Tssr137562	transcription start site region 137562	143 bp downstream
Tssr137563	transcription start site region 137563	915 bp upstream
Tssr137564	transcription start site region 137564	934 bp upstream
Tssr137565	transcription start site region 137565	999 bp upstream
Tssr137566	transcription start site region 137566	1098 bp upstream
Tssr137567	transcription start site region 137567	1463 bp upstream
Tssr137568	transcription start site region 137568	1482 bp upstream
Tssr137569	transcription start site region 137569	1513 bp upstream
Tssr137570	transcription start site region 137570	1528 bp upstream
Tssr137571	transcription start site region 137571	1862 bp upstream
Tssr137572	transcription start site region 137572	1885 bp upstream
Tssr137573	transcription start site region 137573	1979 bp upstream
Tssr137574	transcription start site region 137574	2000 bp upstream
Tssr140501	transcription start site region 140501	1165 bp upstream
Tssr140502	transcription start site region 140502	1019 bp upstream
Tssr140503	transcription start site region 140503	981 bp upstream
Tssr140504	transcription start site region 140504	1036 bp downstream
Tssr140505	transcription start site region 140505	1109 bp downstream
Tssr140506	transcription start site region 140506	1516 bp downstream
Tssr140507	transcription start site region 140507	1899 bp downstream
Tssr140508	transcription start site region 140508	1943 bp downstream
Tssr140509	transcription start site region 140509	1962 bp downstream
Tssr140510	transcription start site region 140510	1977 bp downstream