rs254579321 SNP Detail

Summary

• ID
  rs254579321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgaagaca actacagtgt acttacatat
  aacaataaat agatctttGG GCCAGAGAGG GTAGGGCTAG AGCGAGcaga ggtcctaaat
  tcaattccca gcaaccacat gatggctcat aaccatctgt atagctacag tgtactcata
  Y
  acataaaata aataaataca tctttTTTTT TTTAATTGAA CTTAAAAAGA AGAGGAGTTt
  gaggtgacag ctcagtttaa agcaagcaca gaggcctgaa attgatcctc agaacccaga
  ttttaaagta aaaattcctg gatagtattg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083836	CHEV_15_100507544	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254579321					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574994 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509796	regulatory region 509796	150 bp distal
Rr509797	regulatory region 509797	1529 bp proximal
Rr509798	regulatory region 509798	1739 bp proximal
Tssr4721	transcription start site region 4721	1539 bp upstream
Tssr136468	transcription start site region 136468	1751 bp upstream
Tssr136469	transcription start site region 136469	1711 bp upstream
Tssr136470	transcription start site region 136470	1699 bp upstream
Tssr136471	transcription start site region 136471	1677 bp upstream
Tssr136472	transcription start site region 136472	1666 bp upstream
Tssr136473	transcription start site region 136473	971 bp downstream
Tssr136474	transcription start site region 136474	1001 bp downstream
Tssr136475	transcription start site region 136475	1060 bp downstream
Tssr136476	transcription start site region 136476	1722 bp downstream