rs254580779 SNP Detail

Summary

• ID
  rs254580779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCCCTC ATACCCTGCG
  ACCAGAACTC CAGCCCTAGG GAGTAGTGGG CAGGGCCTCT TGCCGCGCCT CACGTCCTGC
  TTTTCGCCTC CTTCAACGTT GTCTGCTAGC TGGTTTTCCT GCTCTCTCTC TCCCAGGAGA
  CGAACGCTTG AGCCCGAGAT GGCAGCCACC CTGCTCATGT CTGGGACTCA GGTAAGCCCC
  R
  AGGGCTCTGC TTACCCATCT TGCCCGGTGT TTCCCCGTCT GCAAACCCCT ATAGGAAATT
  CCCTGGGATA AGCTCATTTT GCTATTCTGC TTAGTATACG GGCTTCGAGT TGGCTAATAT
  AACCATATAC AAGCATATAT AGAACACCCA CTGTAAGACT AAATACTGAG GAGAATAAAA
  CCAAACAAGA TGGGTGGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363387935	MGP_WTSI_4_135842406	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254580779					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363387935	MGP_WTSI_4_135842406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	within coordinates
Rr398613	regulatory region 398613	945 bp downstream
Rr602340	regulatory region 602340	1915 bp distal
Rr602341	regulatory region 602341	414 bp distal
Rr602342	regulatory region 602342	within coordinates
Rr602343	regulatory region 602343	1369 bp proximal
Tssr39694	transcription start site region 39694	1839 bp downstream
Tssr39695	transcription start site region 39695	1805 bp downstream
Tssr39696	transcription start site region 39696	1774 bp downstream
Tssr39697	transcription start site region 39697	377 bp downstream
Tssr39698	transcription start site region 39698	341 bp downstream
Tssr39699	transcription start site region 39699	301 bp downstream
Zfp46	zinc finger protein 46	Intron