rs254582526 SNP Detail

Summary

• ID
  rs254582526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55910599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCAGGT AGAGCTCACA
  AGATCATTTT CGTTCCGGAA CTCAAAGCAG ATGTACAGTG GCATCCCTGT CATTGCTGCC
  AATATGGATA CCGTGGGCAC TTTTGAAATG GCTAGGGTTC TCTGTAAGGT GAGATTAACC
  TTATGCCCCC TACCAGATCT TCTCCCAGCT AGCGGCTACA GAGGAATTGC ATCTGTATTC
  Y
  CAGTCTCTGG CAATTAACAG AATGTTGTGT TTACTATTTT TTTTTCCATT ACTAAGAACC
  ATTTGATCAG TTCAAAGATC TGTCTGAACT AGTGAGATTC AAATTTAGAT CTGTTTCATC
  TTTTTTATTA TAATCTCCCA TAAATTATAT ACTTTACCAA ATTCTTCCAG TGCCCACCCA
  GGTCAACCCA AGCACATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391161591	MGP_WTSI_14_56291979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254582526					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391161591	MGP_WTSI_14_56291979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55910599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	716 bp distal
Gmpr2	guanosine monophosphate reductase 2	within coordinates
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	1262 bp upstream
Rr492562	regulatory region 492562	1029 bp distal
Rr492563	regulatory region 492563	1087 bp distal
Rr492564	regulatory region 492564	897 bp distal
Tinf2	Terf1 (TRF1)-interacting nuclear factor 2	1547 bp downstream
Tssr125802	transcription start site region 125802	1990 bp downstream
Tssr125803	transcription start site region 125803	844 bp downstream
Tssr125804	transcription start site region 125804	827 bp downstream
Tssr125805	transcription start site region 125805	751 bp downstream
Tssr128855	transcription start site region 128855	1273 bp upstream
Tssr128856	transcription start site region 128856	1224 bp upstream
Tssr128857	transcription start site region 128857	1017 bp upstream
Tssr128858	transcription start site region 128858	995 bp upstream
Tssr128859	transcription start site region 128859	963 bp upstream
Tssr128860	transcription start site region 128860	934 bp upstream