rs254582670 SNP Detail

Summary

• ID
  rs254582670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46922655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCACC CCCTTTTCTT
  TCCCCCGAGA CAGGGCTTCT CTGTGTAGCC CTGGCTGTCC TGGAACTCAC TCTGTAGACC
  AGGTTGGCCT CAAACTCAGA AATCTGCCTG CCTCTGCCTC CAAGTGCTGG GATTAAAGGC
  GTGCGCCACC ACTGCCCGGC GGCCATGCCC TTTCTTATAC CTGACTCTGC CCTTCAGTTT
  Y
  CTGTTCTACA GAAGAGGACC AAAGGTGGTA CCACCTCATA GGGTTATGGA CATTATAGTT
  GATTAACAGT GTCACCTAGT AAATGATATG TTATTAGAGG TGTTCTGGCA ATAATTGTCC
  CTCAAATTTA AGGCAATATT AGAAAGACTT CCATCTAATG CTGGGAGCAA ACCCTCCTGT
  ACCTGGATGA CTGTCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374534951	MGP_WTSI_8_47554972	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254582670					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534951	MGP_WTSI_8_47554972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46922655 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	1559 bp upstream
Cpgi20317	CpG island 20317	1010 bp proximal
Gm45244	predicted gene 45244	1773 bp downstream
Gm64268	predicted gene, 64268	373 bp downstream
Rr186591	regulatory region 186591	745 bp proximal
Rr191786	regulatory region 191786	758 bp distal
Rr368530	regulatory region 368530	938 bp upstream
Tssr77199	transcription start site region 77199	1430 bp upstream
Tssr77200	transcription start site region 77200	1463 bp upstream
Tssr77201	transcription start site region 77201	1551 bp upstream
Tssr81204	transcription start site region 81204	1988 bp downstream